Initial revision

[mothur.git] / rabundvector.hpp

diff --git a/rabundvector.hpp b/rabundvector.hpp
new file mode 100644 (file)
index 0000000..a0807e5
--- /dev/null
+++ b/rabundvector.hpp
@@ -0,0 +1,45 @@
+#ifndef RABUND_H
+#define RABUND_H
+
+#include "datavector.hpp"
+
+class RAbundVector : public DataVector {
+       
+public:
+       RAbundVector();
+       RAbundVector(int);
+//     RAbundVector(const RAbundVector&);
+       RAbundVector(string, vector<int>);
+       RAbundVector(const RAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
+       RAbundVector(ifstream&);
+       ~RAbundVector();
+
+       int getNumBins();               
+       int getNumSeqs();                                                       
+       int getMaxRank();                                                       
+
+       void set(int, int);     
+       int get(int);
+       void push_back(int);
+       void pop_back();
+       void resize(int);
+       int size();
+       vector<int>::reverse_iterator rbegin();
+       vector<int>::reverse_iterator rend();
+       
+       void print(ostream&);
+       void print(string, ostream&);
+       
+       RAbundVector getRAbundVector();
+       SAbundVector getSAbundVector();
+       OrderVector getOrderVector(map<string,int>*);
+       
+private:
+       vector<int> data;
+       int maxRank;
+       int numBins;
+       int numSeqs;    
+};
+
+
+#endif