fixes while testing

[mothur.git] / phylotypecommand.cpp

diff --git a/phylotypecommand.cpp b/phylotypecommand.cpp
index c4751b5481a8c11803f3fd2582bdd013810644ff..2018170648761a91b5b9026fada7079b0b4e73e1 100644 (file)
--- a/phylotypecommand.cpp
+++ b/phylotypecommand.cpp
@@ -28,6 +28,7 @@ vector<string> PhylotypeCommand::getValidParameters(){
 //**********************************************************************************************************************
 PhylotypeCommand::PhylotypeCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["list"] = tempOutNames;