X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=phylotypecommand.cpp;h=2018170648761a91b5b9026fada7079b0b4e73e1;hp=c4751b5481a8c11803f3fd2582bdd013810644ff;hb=191ae1be0679d5cf4eda950b3b1bf26fb7dd503d;hpb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd

diff --git a/phylotypecommand.cpp b/phylotypecommand.cpp
index c4751b5..2018170 100644
--- a/phylotypecommand.cpp
+++ b/phylotypecommand.cpp
@@ -28,6 +28,7 @@ vector<string> PhylotypeCommand::getValidParameters(){
 //**********************************************************************************************************************
 PhylotypeCommand::PhylotypeCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["list"] = tempOutNames;