added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / pcacommand.h

diff --git a/pcacommand.h b/pcacommand.h
index 143e83dda8efbfb2bbd3548e0c02f47920433f26..a447ffced3040086a2c91a7f6014a79cf50b58b8 100644 (file)
--- a/pcacommand.h
+++ b/pcacommand.h
@@ -25,7 +25,7 @@ public:
 private:
 
        bool abort;
-       string phylipfile, columnfile, namefile, format, filename, fbase;
+       string phylipfile, columnfile, namefile, format, filename, fbase, outputDir;
        float cutoff, precision;
        
        void get_comment(istream&, char, char);