Initial revision

[mothur.git] / ordervector.hpp

diff --git a/ordervector.hpp b/ordervector.hpp
new file mode 100644 (file)
index 0000000..92259a8
--- /dev/null
+++ b/ordervector.hpp
@@ -0,0 +1,51 @@
+#ifndef ORDER_H
+#define ORDER_H
+
+#include "datavector.hpp"
+#include "sabundvector.hpp"
+#include "rabundvector.hpp"
+
+
+class OrderVector : public DataVector {
+       
+public:
+       OrderVector();
+//     OrderVector(int);
+//     OrderVector(const OrderVector& ov);
+       OrderVector(int ns, int nb=0, int mr=0) : DataVector(), data(ns, -1), maxRank(0), numBins(0), numSeqs(0) {};
+       OrderVector(const OrderVector& ov)      : DataVector(ov.label), data(ov.data), maxRank(ov.maxRank), numBins(ov.numBins), numSeqs(ov.numSeqs), needToUpdate(ov.needToUpdate) {if(needToUpdate == 1){     updateStats();}};
+
+
+       OrderVector(string, vector<int>);
+       OrderVector(ifstream&);
+       ~OrderVector(){};
+       
+       void set(int, int);
+       int get(int);
+       void push_back(int);
+       void resize(int);
+       int size();
+       void print(string, ostream&);
+       vector<int>::iterator begin();
+       vector<int>::iterator end();
+
+       void print(ostream&);
+
+       int getNumBins();
+       int getNumSeqs();
+       int getMaxRank();
+               
+       RAbundVector getRAbundVector();
+       SAbundVector getSAbundVector();
+       OrderVector getOrderVector(map<string,int>*);
+       
+private:
+       vector<int> data;
+       int maxRank;
+       int numBins;
+       int numSeqs;
+       bool needToUpdate;
+       void updateStats();
+};
+
+#endif