working on pam

[mothur.git] / ordervector.cpp

diff --git a/ordervector.cpp b/ordervector.cpp
index 360c898259f8742446c3488289cf4231221c0703..a6dff32386beb1cfeae07a1aa9f01decee5ea0f1 100644 (file)
--- a/ordervector.cpp
+++ b/ordervector.cpp
@@ -47,7 +47,7 @@ OrderVector::OrderVector(ifstream& f) : DataVector() {
                updateStats();
        }
        catch(exception& e) {
-               errorOut(e, "OrderVector", "OrderVector");
+               m->errorOut(e, "OrderVector", "OrderVector");
                exit(1);
        }
 }
@@ -73,7 +73,14 @@ int OrderVector::getMaxRank(){
        if(needToUpdate == 1){  updateStats();  }
        return maxRank;
 }
+/***********************************************************************/
 
+void OrderVector::clear(){
+       numBins = 0;
+       maxRank = 0;
+       numSeqs = 0;
+       data.clear();
+}
 /***********************************************************************/
 
 
@@ -112,7 +119,7 @@ void OrderVector::print(ostream& output){
                output << endl;
        }
        catch(exception& e) {
-               errorOut(e, "OrderVector", "print");
+               m->errorOut(e, "OrderVector", "print");
                exit(1);
        }
 }
@@ -129,7 +136,7 @@ void OrderVector::print(string prefix, ostream& output){
                output << endl;
        }
        catch(exception& e) {
-               errorOut(e, "OrderVector", "print");
+               m->errorOut(e, "OrderVector", "print");
                exit(1);
        }
 }
@@ -137,7 +144,7 @@ void OrderVector::print(string prefix, ostream& output){
 /***********************************************************************/
 
 void OrderVector::resize(int){
-       mothurOut("resize() did nothing in class OrderVector");
+       m->mothurOut("resize() did nothing in class OrderVector");
 }
 
 /***********************************************************************/
@@ -179,7 +186,7 @@ RAbundVector OrderVector::getRAbundVector(){
                return rav;
        }
        catch(exception& e) {
-               errorOut(e, "OrderVector", "getRAbundVector");
+               m->errorOut(e, "OrderVector", "getRAbundVector");
                exit(1);
        }
 }
@@ -228,7 +235,7 @@ void OrderVector::updateStats(){
                }
        }
        catch(exception& e) {
-               errorOut(e, "OrderVector", "updateStats");
+               m->errorOut(e, "OrderVector", "updateStats");
                exit(1);
        }
 }