X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=ordervector.cpp;h=a6dff32386beb1cfeae07a1aa9f01decee5ea0f1;hp=360c898259f8742446c3488289cf4231221c0703;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2

diff --git a/ordervector.cpp b/ordervector.cpp
index 360c898..a6dff32 100644
--- a/ordervector.cpp
+++ b/ordervector.cpp
@@ -47,7 +47,7 @@ OrderVector::OrderVector(ifstream& f) : DataVector() {
 		updateStats();
 	}
 	catch(exception& e) {
-		errorOut(e, "OrderVector", "OrderVector");
+		m->errorOut(e, "OrderVector", "OrderVector");
 		exit(1);
 	}
 }
@@ -73,7 +73,14 @@ int OrderVector::getMaxRank(){
 	if(needToUpdate == 1){	updateStats();	}
 	return maxRank;
 }
+/***********************************************************************/
 
+void OrderVector::clear(){
+	numBins = 0;
+	maxRank = 0;
+	numSeqs = 0;
+	data.clear();
+}
 /***********************************************************************/
 
 
@@ -112,7 +119,7 @@ void OrderVector::print(ostream& output){
 		output << endl;
 	}
 	catch(exception& e) {
-		errorOut(e, "OrderVector", "print");
+		m->errorOut(e, "OrderVector", "print");
 		exit(1);
 	}
 }
@@ -129,7 +136,7 @@ void OrderVector::print(string prefix, ostream& output){
 		output << endl;
 	}
 	catch(exception& e) {
-		errorOut(e, "OrderVector", "print");
+		m->errorOut(e, "OrderVector", "print");
 		exit(1);
 	}
 }
@@ -137,7 +144,7 @@ void OrderVector::print(string prefix, ostream& output){
 /***********************************************************************/
 
 void OrderVector::resize(int){
-	mothurOut("resize() did nothing in class OrderVector");
+	m->mothurOut("resize() did nothing in class OrderVector");
 }
 
 /***********************************************************************/
@@ -179,7 +186,7 @@ RAbundVector OrderVector::getRAbundVector(){
 		return rav;
 	}
 	catch(exception& e) {
-		errorOut(e, "OrderVector", "getRAbundVector");
+		m->errorOut(e, "OrderVector", "getRAbundVector");
 		exit(1);
 	}
 }
@@ -228,7 +235,7 @@ void OrderVector::updateStats(){
 		}
 	}
 	catch(exception& e) {
-		errorOut(e, "OrderVector", "updateStats");
+		m->errorOut(e, "OrderVector", "updateStats");
 		exit(1);
 	}
 }