fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / optionparser.h

diff --git a/optionparser.h b/optionparser.h
index 7707e739ce15d7e0dd6657bc08a288222dfbdbb0..facd1f85182cc526a6db01d85968d9231afcfc88 100644 (file)
--- a/optionparser.h
+++ b/optionparser.h
@@ -14,7 +14,7 @@
 
 #include "mothur.h"
 #include "mothurout.h"
-
+#include "command.hpp"
 
 /***********************************************************************/
 
@@ -23,6 +23,7 @@ public:
        OptionParser(string);
        ~OptionParser() {}
        map<string, string> getParameters();
+       bool getNameFile(vector<string>);
 private:
        map<string, string> parameters;
        MothurOut* m;