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[mothur.git] / optionparser.h

diff --git a/optionparser.h b/optionparser.h
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+#ifndef OPTIONPARSER_H
+#define OPTIONPARSER_H
+
+/*
+ *  optionparser.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 6/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+
+
+#include "mothur.h"
+#include "mothurout.h"
+#include "command.hpp"
+
+/***********************************************************************/
+
+class OptionParser {
+public:
+       OptionParser(string);
+       ~OptionParser() {}
+       map<string, string> getParameters();
+       bool getNameFile(vector<string>);
+private:
+       map<string, string> parameters;
+       MothurOut* m;
+};
+
+/***********************************************************************/
+
+#endif