--- /dev/null
+#ifndef CORRECTDIST_H
+#define CORRECTDIST_H
+
+
+/*
+ * pds.seqdist.h
+ *
+ *
+ * Created by Pat Schloss on 8/12/11.
+ * Copyright 2011 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "mothurout.h"
+
+/**************************************************************************************************/
+
+class correctDist {
+public:
+ correctDist(string, int);
+ correctDist(int);
+ ~correctDist(){}
+
+ int addSeq(string, string);
+ int execute(string);
+
+private:
+ MothurOut* m;
+ int getSequences(string);
+ vector<int> fixSequence(string);
+
+ int driver(int, int, string);
+ int createProcess(string);
+
+ double getDist(vector<int>&, vector<int>&);
+ int getLastMatch(char, vector<vector<char> >&, int, int, vector<int>&, vector<int>&);
+
+ vector<vector<double> > correctMatrix;
+
+ vector<vector<int> > sequences;
+
+ vector<string> names;
+ int numSeqs;
+ int processors;
+ vector<int> start;
+ vector<int> end;
+};
+
+/**************************************************************************************************/
+
+#endif
+
+