added kruskal.wallis command. added worked on make.lefse. working of lefse command...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index f99eac1917cbe2ce5a1ce278c66d27d1df71737e..77b1b6d4ec1efb758973d332aa8e4df00619f58b 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -107,6 +107,8 @@ class MothurOut {
         map<string, int> readNames(string);
         map<string, int> readNames(string, unsigned long int&);
         int readTax(string, map<string, string>&);
+        vector<consTax> readConsTax(string);
+        int readConsTax(string, map<string, consTax2>&);
         int readNames(string, map<string, string>&, map<string, int>&);
                int readNames(string, map<string, string>&);
         int readNames(string, map<string, string>&, bool);
@@ -151,6 +153,7 @@ class MothurOut {
         string makeList(vector<string>&);
         bool isSubset(vector<string>, vector<string>); //bigSet, subset
         int checkName(string&);
+        map<string, vector<string> > parseClasses(string);
                
                //math operation
                int factorial(int num);