added sets to amova and homova commands. added oligos to make.contigs. added metadat...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 53d4250c771cdbdac15c715c44d97fabf0a92c1a..0d2e86f24cb258b24e78367e1427fc7ee2bc7d31 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -120,7 +120,9 @@ class MothurOut {
                bool checkReleaseVersion(ifstream&, string);
                bool anyLabelsToProcess(string, set<string>&, string);
                bool inUsersGroups(vector<string>, vector<string>);
+        bool inUsersGroups(vector<int>, vector< vector<int> >);
                bool inUsersGroups(string, vector<string>);
+        bool inUsersGroups(int, vector<int>);
                void getNumSeqs(ifstream&, int&);
                int getNumSeqs(ifstream&);
                int getNumNames(string);
@@ -139,6 +141,7 @@ class MothurOut {
                void splitAtDash(string&, vector<string>&);
                void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
+        vector<string> splitWhiteSpaceWithQuotes(string);
                int removeConfidences(string&);
         string removeQuotes(string);
         string makeList(vector<string>&);