added oligos class. added check orient parameter to trim.flows, sffinfo, fastq.info...

[mothur.git] / mothur.h

diff --git a/mothur.h b/mothur.h
index 102b44d57030561244c8ba6205f7c02c831b9b36..b4fc3ce1c41171c0cde75a83f6365e12873984bc 100644 (file)
--- a/mothur.h
+++ b/mothur.h
@@ -210,6 +210,16 @@ struct distlinePair {
        int end;
        
 };
        int end;
        
 };

+/************************************************************/
+struct oligosPair {
+       string forward;
+       string reverse;
+       
+       oligosPair() { forward = ""; reverse = "";  }
+       oligosPair(string f, string r) : forward(f), reverse(r) {}
+       ~oligosPair() {}
+};
+

 /************************************************************/
 struct seqPriorityNode {
        int numIdentical;
 /************************************************************/
 struct seqPriorityNode {
        int numIdentical;