added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / mgclustercommand.h

diff --git a/mgclustercommand.h b/mgclustercommand.h
index 2ac80c91dd65fa7cf56f71331e4c4486c68c8b87..89b72fceb2ad6c57cf0cde5ae531bf985bf3468f 100644 (file)
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -38,7 +38,7 @@ private:
        ListVector oldList;
        vector<seqDist> overlapMatrix;
        
-       string blastfile, method, namefile, overlapFile, distFile;
+       string blastfile, method, namefile, overlapFile, distFile, outputDir;
        ofstream sabundFile, rabundFile, listFile;
        float cutoff, penalty;
        int precision, length, precisionLength;