fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / mergegroupscommand.h

diff --git a/mergegroupscommand.h b/mergegroupscommand.h
index 7907dfe85f556682d1cc796323314a2f0c8d7b67..7f216ebed7653a2647c4770e4ce17e5e6d881e95 100644 (file)
--- a/mergegroupscommand.h
+++ b/mergegroupscommand.h
@@ -38,10 +38,12 @@ private:
        
        bool abort, allLines, pickedGroups;
        set<string> labels; //holds labels to be used
-       string groups, label, outputDir, inputDir, designfile, sharedfile;
+       string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile;
        vector<string> Groups, outputNames;
                
        int process(vector<SharedRAbundVector*>&, ofstream&);
+       int processSharedFile(GroupMap*&);
+       int processGroupFile(GroupMap*&);
 };
 
 #endif