changing command name classify.shared to classifyrf.shared

[mothur.git] / mergefilecommand.h

diff --git a/mergefilecommand.h b/mergefilecommand.h
index 56da3152309ec3c422cccb3aa0c6abce9f92be46..d7b0aff0f9691622ebc2484776ff1ba5eb5dde35 100644 (file)
--- a/mergefilecommand.h
+++ b/mergefilecommand.h
@@ -17,17 +17,22 @@ class MergeFileCommand : public Command {
 public:
        MergeFileCommand(string);
        MergeFileCommand();
-       ~MergeFileCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help();    
+       ~MergeFileCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "merge.files"; }
+       string getCommandCategory()             { return "General";             }
+       string getHelpString(); 
+    string getOutputPattern(string){ return "";  }     
+       string getCitation() { return "http://www.mothur.org/wiki/Merge.files"; }
+       string getDescription()         { return "appends files creating one file"; }
 
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
 private:
        vector<string> fileNames, outputNames;
-       map<string, vector<string> > outputTypes;
        string outputFileName;
        int numInputFiles;
        bool abort;