X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=mergefilecommand.h;h=d7b0aff0f9691622ebc2484776ff1ba5eb5dde35;hp=56da3152309ec3c422cccb3aa0c6abce9f92be46;hb=615301e57c25e241356a9c2380648d117709458d;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281

diff --git a/mergefilecommand.h b/mergefilecommand.h
index 56da315..d7b0aff 100644
--- a/mergefilecommand.h
+++ b/mergefilecommand.h
@@ -17,17 +17,22 @@ class MergeFileCommand : public Command {
 public:
 	MergeFileCommand(string);
 	MergeFileCommand();
-	~MergeFileCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();	
+	~MergeFileCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "merge.files";	}
+	string getCommandCategory()		{ return "General";		}
+	string getHelpString();	
+    string getOutputPattern(string){ return "";  }	
+	string getCitation() { return "http://www.mothur.org/wiki/Merge.files"; }
+	string getDescription()		{ return "appends files creating one file"; }
 
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 private:
 	vector<string> fileNames, outputNames;
-	map<string, vector<string> > outputTypes;
 	string outputFileName;
 	int numInputFiles;
 	bool abort;