Revert to previous commit

[mothur.git] / mergefilecommand.h

diff --git a/mergefilecommand.h b/mergefilecommand.h
new file mode 100644 (file)
index 0000000..1c3c4d5
--- /dev/null
+++ b/mergefilecommand.h
@@ -0,0 +1,40 @@
+#ifndef MERGEFILECOMMAND_H
+#define MERGEFILECOMMAND_H
+
+/*
+ *  mergefilecommand.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 6/14/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "command.hpp"
+
+class MergeFileCommand : public Command {
+public:
+       MergeFileCommand(string);
+       MergeFileCommand();
+       ~MergeFileCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "merge.files"; }
+       string getCommandCategory()             { return "General";             }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Merge.files"; }
+       string getDescription()         { return "appends files creating one file"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
+private:
+       vector<string> fileNames, outputNames;
+       string outputFileName;
+       int numInputFiles;
+       bool abort;
+};
+
+#endif