added sets to amova and homova commands. added oligos to make.contigs. added metadat...

[mothur.git] / makebiomcommand.h

diff --git a/makebiomcommand.h b/makebiomcommand.h
index 8a458fe33a398de607ffe05e48a5950b9368353c..ee9bd1c99cf415c93b57fc85087a06d870298115 100644 (file)
--- a/makebiomcommand.h
+++ b/makebiomcommand.h
@@ -35,8 +35,8 @@ public:
        
 private:
     
-       string sharedfile, contaxonomyfile, groups, outputDir, format, label;
-       vector<string> outputNames, Groups;
+       string sharedfile, contaxonomyfile, metadatafile, groups, outputDir, format, label;
+       vector<string> outputNames, Groups, sampleMetadata;
        set<string> labels;
     
        bool abort, allLines;
@@ -44,6 +44,7 @@ private:
     int getBiom(vector<SharedRAbundVector*>&);
     vector<string> getMetaData(vector<SharedRAbundVector*>&);
     vector<string> parseTax(string tax, vector<string>& scores);
+    int getSampleMetaData(vector<SharedRAbundVector*>&);
 };