Initial revision

[mothur.git] / listvector.hpp

diff --git a/listvector.hpp b/listvector.hpp
new file mode 100644 (file)
index 0000000..dbd61cd
--- /dev/null
+++ b/listvector.hpp
@@ -0,0 +1,50 @@
+#ifndef LIST_H
+#define LIST_H
+
+#include "datavector.hpp"
+#include "groupmap.h"
+#include "globaldata.hpp"
+#include "sharedordervector.h"
+#include <iostream>
+#include <map>
+
+
+class ListVector : public DataVector {
+       
+public:
+       ListVector();
+       ListVector(int);
+//     ListVector(const ListVector&);
+       ListVector(string, vector<string>);
+       ListVector(const ListVector& lv) : DataVector(lv.label), data(lv.data), maxRank(lv.maxRank), numBins(lv.numBins), numSeqs(lv.numSeqs){};
+       ListVector(ifstream&);
+       ~ListVector(){};
+       
+       int getNumBins()                                                        {       return numBins;         }
+       int getNumSeqs()                                                        {       return numSeqs;         }
+       int getMaxRank()                                                        {       return maxRank;         }
+
+       void set(int, string);  
+       string get(int);
+       void push_back(string);
+       void resize(int);
+       void clear();
+       int size();
+       void print(ostream&);
+       
+       RAbundVector getRAbundVector();
+       SAbundVector getSAbundVector();
+       OrderVector getOrderVector(map<string,int>*);
+       SharedOrderVector* getSharedOrderVector();
+       
+private:
+       vector<string> data;
+       GlobalData* globaldata;
+       GroupMap* groupmap;
+       int maxRank;
+       int numBins;
+       int numSeqs;
+
+};
+
+#endif