added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / listseqscommand.h

diff --git a/listseqscommand.h b/listseqscommand.h
index 4e0febd9c6dc84a7b49589e614c076493638c913..04d9e1da99ae079bd9b10d2ba3e30d5b0ba2f01c 100644 (file)
--- a/listseqscommand.h
+++ b/listseqscommand.h
@@ -23,13 +23,14 @@ class ListSeqsCommand : public Command {
                
        private:
                vector<string> names;
-               string fastafile, namefile, groupfile, alignfile, inputFileName;
+               string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile;
                bool abort;
                
                void readFasta();
                void readName();
                void readGroup();
                void readAlign();
+               void readList();
                
 };