Revert to previous commit

[mothur.git] / inputdata.h

diff --git a/inputdata.h b/inputdata.h
new file mode 100644 (file)
index 0000000..658b21d
--- /dev/null
+++ b/inputdata.h
@@ -0,0 +1,52 @@
+#ifndef INPUTDATA_H
+#define INPUTDATA_H
+
+#include "mothur.h"
+#include "ordervector.hpp"
+#include "sharedlistvector.h"
+#include "sharedordervector.h"
+#include "listvector.hpp"
+#include "sharedrabundfloatvector.h"
+
+
+class InputData {
+       
+public:
+       InputData(string, string);
+       InputData(string, string, string);
+       ~InputData();
+       ListVector* getListVector();
+       ListVector* getListVector(string);  //pass the label you want
+       ListVector* getListVector(string, bool);  //pass the label you want, reset filepointer
+       SharedListVector* getSharedListVector();
+       SharedListVector* getSharedListVector(string);  //pass the label you want
+       OrderVector* getOrderVector(); 
+       OrderVector* getOrderVector(string); //pass the label you want
+       SharedOrderVector* getSharedOrderVector();
+       SharedOrderVector* getSharedOrderVector(string);  //pass the label you want
+       SAbundVector* getSAbundVector();
+       SAbundVector* getSAbundVector(string);  //pass the label you want
+       RAbundVector* getRAbundVector();
+       RAbundVector* getRAbundVector(string);  //pass the label you want
+       vector<SharedRAbundVector*> getSharedRAbundVectors();
+       vector<SharedRAbundVector*> getSharedRAbundVectors(string);  //pass the label you want
+       vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors();
+       vector<SharedRAbundFloatVector*> getSharedRAbundFloatVectors(string);  //pass the label you want
+       
+private:
+       string format;
+       ifstream fileHandle;
+       DataVector* input;
+       ListVector* list;
+       SharedListVector* SharedList;
+       OrderVector* output;
+       SharedOrderVector* SharedOrder;
+       SAbundVector* sabund;
+       RAbundVector* rabund;
+       map<string,int> orderMap;
+       string filename;
+       MothurOut* m;
+};
+
+
+#endif