Revert to previous commit

[mothur.git] / helpcommand.cpp

diff --git a/helpcommand.cpp b/helpcommand.cpp
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+++ b/helpcommand.cpp
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+/*
+ *  helpcommand.cpp
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/2/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "helpcommand.h"
+
+//**********************************************************************************************************************
+
+HelpCommand::HelpCommand(string option)  {     
+       validCommands = CommandFactory::getInstance();  
+}
+//**********************************************************************************************************************
+int HelpCommand::execute(){
+       try {
+               validCommands->printCommands(cout);
+               m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
+       
+               m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
+       
+               return 0;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "HelpCommand", "execute");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************/