added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / heatmapsim.cpp

diff --git a/heatmapsim.cpp b/heatmapsim.cpp
index c68d0cc413855650efc86f2370ad7ab82508e6b7..b29e98b68c4af0824d4effbffa753ede522309c7 100644 (file)
--- a/heatmapsim.cpp
+++ b/heatmapsim.cpp
@@ -20,7 +20,7 @@
 #include "sharedbraycurtis.h"
 
 //**********************************************************************************************************************
-HeatMapSim::HeatMapSim(){
+HeatMapSim::HeatMapSim(string dir) : outputDir(dir) {
                globaldata = GlobalData::getInstance();
 }
 //**********************************************************************************************************************
@@ -32,7 +32,7 @@ void HeatMapSim::getPic(vector<SharedRAbundVector*> lookup, vector<Calculator*>
                //make file for each calculator selected
                for (int m = 0; m < calcs.size(); m++) {
                        
-                       string filenamesvg = getRootName(globaldata->inputFileName) + lookup[0]->getLabel() + calcs[m]->getName() + ".heatmap.sim.svg";
+                       string filenamesvg = outputDir + getRootName(getSimpleName(globaldata->inputFileName)) + lookup[0]->getLabel() + calcs[m]->getName() + ".heatmap.sim.svg";
                        openOutputFile(filenamesvg, outsvg);
                        
                        //svg image
@@ -107,7 +107,7 @@ void HeatMapSim::getPic(vector< vector<double> > dists, vector<string> groups) {
                
                vector<double> sims;
                
-               string filenamesvg = getRootName(globaldata->inputFileName) + "heatmap.sim.svg";
+               string filenamesvg = outputDir + getRootName(getSimpleName(globaldata->inputFileName)) + "heatmap.sim.svg";
                openOutputFile(filenamesvg, outsvg);
                        
                //svg image