added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / getsharedotucommand.h

diff --git a/getsharedotucommand.h b/getsharedotucommand.h
index 3b14b39bb70e8939641dea69c2e53bcb98a82ffa..5b5516c3a3d6850aa36cce33b104c888872b9137 100644 (file)
--- a/getsharedotucommand.h
+++ b/getsharedotucommand.h
@@ -33,7 +33,7 @@ class GetSharedOTUCommand : public Command {
                GroupMap* groupMap;
                
                set<string> labels;
-               string fastafile, label, groups, listfile, groupfile, output;
+               string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir;
                bool abort, allLines, unique;
                vector<string> Groups;
                map<string, string> groupFinder;