created mothurOut class to handle logfiles

[mothur.git] / getseqscommand.h

diff --git a/getseqscommand.h b/getseqscommand.h
index 2bd0754b93715a347e517d7b11be3bf8f478e944..809109c486de9f00b39091b863da8a23dfc95a96 100644 (file)
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -16,14 +16,15 @@ class GetSeqsCommand : public Command {
        
        public:
        
-               GetSeqsCommand(string); 
+               GetSeqsCommand(string);
                ~GetSeqsCommand(){};
                int execute();
                void help();    
                
        private:
                set<string> names;
-               string accnosfile, fastafile, namefile, groupfile, alignfile;
+               vector<string> outputNames;
+               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
                bool abort;
                
                void readFasta();
@@ -31,6 +32,7 @@ class GetSeqsCommand : public Command {
                void readGroup();
                void readAlign();
                void readAccnos();
+               void readList();
                
 };