added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / getoturepcommand.h

diff --git a/getoturepcommand.h b/getoturepcommand.h
index 0e8a121793823677186d67e5d3cd255dd7ec47d1..ceea8988a2bc0963abaa4d18d898729d88c8960a 100644 (file)
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -53,7 +53,7 @@ private:
        ReadMatrix* readMatrix;
        FormatMatrix* formatMatrix;
        NameAssignment* nameMap;
-       string filename, fastafile, listfile, namefile, groupfile, label, sorted, phylipfile, columnfile, distFile, format;
+       string filename, fastafile, listfile, namefile, groupfile, label, sorted, phylipfile, columnfile, distFile, format, outputDir;
        ofstream out;
        ifstream in, inNames, inRow;
        bool abort, allLines, groupError, large;