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[mothur.git] / getlabelcommand.h

diff --git a/getlabelcommand.h b/getlabelcommand.h
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+#ifndef GETLABELCOMMAND_H
+#define GETLABELCOMMAND_H
+
+/*
+ *  getlabelcommand.h
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 1/30/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
+
+
+class GetlabelCommand : public Command {
+public:
+       GetlabelCommand(string);
+       GetlabelCommand();
+       ~GetlabelCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "get.label";                           }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+       string getDescription()         { return "outputs labels"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
+       
+private:
+       string inputfile, listfile, rabundfile, sabundfile, format;
+       bool abort;
+       vector<string> outputNames;
+};
+
+#endif