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[mothur.git] / getgroupcommand.h

diff --git a/getgroupcommand.h b/getgroupcommand.h
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+#ifndef GETGROUPCOMMAND_H
+#define GETGROUPCOMMAND_H
+
+/*
+ *  getgroupcommand.h
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 2/2/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class GetgroupCommand : public Command {
+public:
+       GetgroupCommand(string);
+       GetgroupCommand();
+       ~GetgroupCommand() {}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "get.group";                           }
+       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+       string getDescription()         { return "outputs group names"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
+       
+private:
+       
+       string outputFile, sharedfile, outputDir;
+       vector<string> outputNames;
+       ofstream out;
+       ifstream in;
+       bool abort;
+
+};
+
+#endif