added current as option is lists of file names, processors now outputted with current...

[mothur.git] / getcurrentcommand.cpp

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index 9289ba6da677a6e91f989a3b15c5f407d32ce3f8..5f5235647d28168d4ca187189d5911266a24c71a 100644 (file)
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -135,6 +135,10 @@ int GetCurrentCommand::execute(){
                                        m->setAccnosFile("");
                                }else if (types[i] == "taxonomy") {
                                        m->setTaxonomyFile("");
+                               }else if (types[i] == "flow") {
+                                       m->setFlowFile("");
+                               }else if (types[i] == "processors") {
+                                       m->setProcessors("1");
                                }else if (types[i] == "all") {
                                        m->clearCurrentFiles();
                                }else {