working on windows paralellization, added trimOligos class to be used by trim.flows...

[mothur.git] / flowdata.cpp

diff --git a/flowdata.cpp b/flowdata.cpp
index d1769bbed46e34c12a1a8ad4a1f69bebaeca071d..6d6c89bc88fad0f6a474f5d466bc6c7d1d082e47 100644 (file)
--- a/flowdata.cpp
+++ b/flowdata.cpp
@@ -42,14 +42,11 @@ FlowData::FlowData(int numFlows, float signal, float noise, int maxHomoP, string
 bool FlowData::getNext(ifstream& flowFile){
        
        try {
-               
-               string lengthString;
-               string flowString;
-               
-               flowFile >> seqName >> endFlow;         
-               for(int i=0;i<numFlows;i++)     {       flowFile >> flowData[i];        }
-               
-               updateEndFlow();
+               flowFile >> seqName >> endFlow; 
+               //cout << "in Flowdata " + seqName << endl;
+               for(int i=0;i<numFlows;i++)     {       flowFile >> flowData[i];        }
+               //cout << "in Flowdata read " << seqName + " done" << endl;
+               updateEndFlow(); 
                translateFlow();
                
                m->gobble(flowFile);