working on chimera change to add trim feature, fixed bug in print of distance file...

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index b9436f8078df0da22408dafc889d16e62d8a7d6c..f5c7bd6876a9d98ed7c9dffa1e4fcd80b76005b2 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -329,7 +329,7 @@ int FilterSeqsCommand::filterSequences() {
                                
                                string filteredFasta = outputDir + m->getRootName(m->getSimpleName(fastafileNames[s])) + "filter.fasta";
 #ifdef USE_MPI 
-                               int pid, start, end, numSeqsPerProcessor, num; 
+                               int pid, numSeqsPerProcessor, num; 
                                int tag = 2001;
                                vector<unsigned long int>MPIPos;
                                                
@@ -338,7 +338,6 @@ int FilterSeqsCommand::filterSequences() {
                                MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
                                
                                MPI_File outMPI;
-                               MPI_File tempMPI;
                                MPI_File inMPI;
                                int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; 
                                int inMode=MPI_MODE_RDONLY;