sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / fileoutput.cpp

diff --git a/fileoutput.cpp b/fileoutput.cpp
index c2432acaaf039b9ef9ac59b287cd55649f606105..a4a68a8ef25a66ca52052faf8a1e8e6221bec4af 100644 (file)
--- a/fileoutput.cpp
+++ b/fileoutput.cpp
@@ -15,7 +15,7 @@ ThreeColumnFile::~ThreeColumnFile(){
        
        inFile.close();
        outFile.close();
-       remove(outName.c_str());
+       m->mothurRemove(outName);
 }
 
 /***********************************************************************/
@@ -78,7 +78,7 @@ void ThreeColumnFile::resetFile(){
                }
                counter = 1;
                
-               remove(inName.c_str());
+               m->mothurRemove(inName);
                renameOk = rename(outName.c_str(), inName.c_str());
                
                //renameFile(outName, inName);
@@ -102,7 +102,7 @@ ColumnFile::~ColumnFile(){
        
        inFile.close();
        outFile.close();
-       remove(outName.c_str());
+       m->mothurRemove(outName);
 }
 
 /***********************************************************************/
@@ -182,7 +182,7 @@ void ColumnFile::resetFile(){
                }
                counter = 1;
                
-               remove(inName.c_str());
+               m->mothurRemove(inName);
                renameOk = rename(outName.c_str(), inName.c_str());
                
                //renameFile(outName, inName);
@@ -206,7 +206,7 @@ SharedThreeColumnFile::~SharedThreeColumnFile(){
        
        inFile.close();
        outFile.close();
-       remove(outName.c_str());
+       m->mothurRemove(outName);
 }
 
 /***********************************************************************/
@@ -270,7 +270,7 @@ void SharedThreeColumnFile::resetFile(){
                }
                counter = 1;
                
-               remove(inName.c_str());
+               m->mothurRemove(inName);
                renameOk = rename(outName.c_str(), inName.c_str());
                
                //renameFile(outName, inName);
@@ -295,7 +295,7 @@ OneColumnFile::~OneColumnFile(){
        
        inFile.close();
        outFile.close();
-       remove(outName.c_str());        
+       m->mothurRemove(outName);       
 }
 
 /***********************************************************************/
@@ -357,7 +357,7 @@ void OneColumnFile::resetFile(){
                }       
                counter = 1;
                
-               remove(inName.c_str());
+               m->mothurRemove(inName);
                renameOk = rename(outName.c_str(), inName.c_str());
                
                //renameFile(outName, inName);
@@ -382,7 +382,7 @@ SharedOneColumnFile::~SharedOneColumnFile(){
        
        inFile.close();
        outFile.close();
-       remove(outName.c_str());        
+       m->mothurRemove(outName);       
 }
 
 /***********************************************************************/
@@ -454,7 +454,7 @@ void SharedOneColumnFile::resetFile(){
                }       
                counter = 1;
 
-               remove(inName.c_str());
+               m->mothurRemove(inName);
                renameOk = rename(outName.c_str(), inName.c_str());
                
                //renameFile(outName, inName);