added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / engine.hpp

diff --git a/engine.hpp b/engine.hpp
index d3f156e533a6a759bab014250dd1d54ad1726c7b..cbcc99aaf2cd8ebc48f6512eb9e88967df8e94b3 100644 (file)
--- a/engine.hpp
+++ b/engine.hpp
@@ -26,7 +26,8 @@ public:
        virtual ~Engine(){}
        virtual bool getInput() = 0;
        virtual string getCommand();
-       vector<string> getOptions() {   return options;         }
+       virtual string getOutputDir()   {       return cFactory->getOutputDir();  }
+       vector<string> getOptions()             {       return options;         }
 protected:
        vector<string> options;
        CommandFactory* cFactory;