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[mothur.git] / dlibshuff.h

diff --git a/dlibshuff.h b/dlibshuff.h
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+#ifndef DLIBSHUFF
+#define DLIBSHUFF
+
+/*
+ *  dlibshuff.h
+ *  Mothur
+ *
+ *  Created by Pat Schloss on 4/8/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "fullmatrix.h"
+#include "libshuff.h"
+
+class DLibshuff : public Libshuff {
+
+public:
+       DLibshuff(FullMatrix*, int, float, float);
+       vector<vector<double> > evaluateAll();
+       float evaluatePair(int, int);
+
+private:
+       int numDXs;
+       double dCalculate(int, int);
+       vector<int> calcN(vector<double>);
+};
+
+#endif