added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / distancecommand.h

diff --git a/distancecommand.h b/distancecommand.h
index 542f4283744024e58b297282f83212ad4b5b1292..c7aaf46137a97715baee381d56824482a0e08e80 100644 (file)
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -34,7 +34,7 @@ private:
        Dist* distCalculator;
        SequenceDB alignDB;
 
-       string countends, phylip, fastafile, calc;
+       string countends, phylip, fastafile, calc, outputDir;
        int processors;
        float cutoff;
        map<int, int> processIDS;   //end line, processid