Revert to previous commit

[mothur.git] / dist.h

diff --git a/dist.h b/dist.h
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+#ifndef DIST_H
+#define DIST_H
+/*
+ *  dist.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 5/7/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "sequence.hpp"
+
+/**************************************************************************************************/
+
+class Dist {
+       
+public:
+       Dist(){ dist = 0; m = MothurOut::getInstance(); }
+       Dist(const Dist& d) : dist(d.dist) { m = MothurOut::getInstance(); }
+       virtual ~Dist() {}
+       virtual void calcDist(Sequence, Sequence) = 0;
+       double getDist()        {       return dist;    }
+
+protected:
+       double dist;
+       MothurOut* m;
+};
+
+/**************************************************************************************************/
+
+#endif