]> git.donarmstrong.com Git - mothur.git/blobdiff - deuniquetreecommand.h
changes while testing
[mothur.git] / deuniquetreecommand.h
index 6d72253bad9b1556aed865cae0a1e8b52c91cdea..849b3d7fef9bfbaa9cb97aaf4e2d38cf1f0bf5c4 100644 (file)
@@ -12,7 +12,6 @@
 
 
 #include "command.hpp"
-#include "treemap.h"
 #include "sharedutilities.h"
 #include "readtree.h"
 
@@ -26,7 +25,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "deunique.tree";               }
        string getCommandCategory()             { return "Hypothesis Testing";          }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "http://www.mothur.org/wiki/Deunique.tree"; }
        string getDescription()         { return "add the redundant sequence names back into a tree of unique sequences"; }
        
@@ -35,7 +36,6 @@ public:
        
        
 private:
-       TreeMap* tmap;
        int numUniquesInName;
        
        bool abort;