X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=deuniquetreecommand.h;h=849b3d7fef9bfbaa9cb97aaf4e2d38cf1f0bf5c4;hp=6d72253bad9b1556aed865cae0a1e8b52c91cdea;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf diff --git a/deuniquetreecommand.h b/deuniquetreecommand.h index 6d72253..849b3d7 100644 --- a/deuniquetreecommand.h +++ b/deuniquetreecommand.h @@ -12,7 +12,6 @@ #include "command.hpp" -#include "treemap.h" #include "sharedutilities.h" #include "readtree.h" @@ -26,7 +25,9 @@ public: vector setParameters(); string getCommandName() { return "deunique.tree"; } string getCommandCategory() { return "Hypothesis Testing"; } + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Deunique.tree"; } string getDescription() { return "add the redundant sequence names back into a tree of unique sequences"; } @@ -35,7 +36,6 @@ public: private: - TreeMap* tmap; int numUniquesInName; bool abort;