fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / deconvolutecommand.cpp

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 3fa622f01ff2fc334f5cbb9d79851a9ca7f8b30c..3541e00d064233c4da10619789291222290b33f1 100644 (file)
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -125,9 +125,15 @@ DeconvoluteCommand::DeconvoluteCommand(string option)  {
                        }
                        
                        oldNameMapFName = validParameter.validFile(parameters, "name", true);
-                       if (oldNameMapFName == "not open") { abort = true; }
+                       if (oldNameMapFName == "not open") { oldNameMapFName = ""; abort = true; }
                        else if (oldNameMapFName == "not found"){       oldNameMapFName = "";   }
                        else { m->setNameFile(oldNameMapFName); }
+                       
+                       if (oldNameMapFName == "") {
+                               vector<string> files; files.push_back(inFastaName);
+                               parser.getNameFile(files);
+                       }
+                       
                }
 
        }