Revert to previous commit

[mothur.git] / datavector.hpp

diff --git a/datavector.hpp b/datavector.hpp
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+++ b/datavector.hpp
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+#ifndef datavector_h
+#define datavector_h
+
+
+#include "mothur.h"
+#include "mothurout.h"
+
+/* This class is parent to listvector, ordervector, rabundvector, sabundvector, sharedordervector, sharedrabundvector, sharedsabundvector. 
+       The child classes all contain OTU information in different forms. */
+       
+
+class RAbundVector;
+class SAbundVector;
+class OrderVector;
+class SharedListVector;
+class SharedOrderVector;
+class SharedSAbundVector;
+class SharedRAbundVector;
+class SharedRAbundFloatVector;
+class GroupMap;
+
+class DataVector {
+       
+public:
+       DataVector(){ m = MothurOut::getInstance(); }// : maxRank(0), numBins(0), numSeqs(0){};
+       DataVector(string l) : label(l) {};
+       DataVector(const DataVector& dv) : label(dv.label){};//, maxRank(dv.maxRank), numBins(dv.numBins), numSeqs(dv.numSeqs) {};
+       DataVector(ifstream&);
+       DataVector(ifstream&, GroupMap*);
+       virtual ~DataVector(){};
+       
+//     virtual int getNumBins()        {       return numBins;         }
+//     virtual int getNumSeqs()        {       return numSeqs;         }
+//     virtual int getMaxRank()        {       return maxRank;         }
+       
+       virtual void resize(int) = 0;
+       virtual int size()      = 0;
+       virtual void print(ostream&) = 0;
+       virtual void printHeaders(ostream&) {};
+       virtual void clear() = 0;
+       
+       void setLabel(string l)         {       label = l;                      }
+       string getLabel()                       {       return label;           }
+
+       virtual RAbundVector getRAbundVector() = 0;
+       virtual SAbundVector getSAbundVector() = 0;
+       virtual OrderVector getOrderVector(map<string,int>* hold = NULL) = 0;
+       
+protected:
+       string label;
+       MothurOut* m;
+//     int maxRank;
+//     int numBins;
+//     int numSeqs;    
+};
+
+/***********************************************************************/
+
+#endif