removed unused copy constructors and comments within comments that where causing...

[mothur.git] / countseqscommand.cpp

diff --git a/countseqscommand.cpp b/countseqscommand.cpp
index 9cdd033ac29609d6f763f52597a4809fea204326..e83c6035731aa5509655dcd25a7a45995c1a0004 100644 (file)
--- a/countseqscommand.cpp
+++ b/countseqscommand.cpp
@@ -174,7 +174,8 @@ int CountSeqsCommand::execute(){
                //open input file
                ifstream in;
                m->openInputFile(namefile, in);
-               
+        
+               int total = 0;
                while (!in.eof()) {
                        if (m->control_pressed) { break; }
                        
@@ -217,7 +218,7 @@ int CountSeqsCommand::execute(){
                                out << firstCol << '\t' << names.size() << endl;
                        }
                        
-                       
+                       total += names.size();
                }
                in.close();
                
@@ -225,6 +226,8 @@ int CountSeqsCommand::execute(){
                
                if (m->control_pressed) { m->mothurRemove(outputFileName); return 0; }
                
+        m->mothurOutEndLine();
+               m->mothurOut("Total number of sequences: " + toString(total)); m->mothurOutEndLine();
                m->mothurOutEndLine();
                m->mothurOut("Output File Name: "); m->mothurOutEndLine();
                m->mothurOut(outputFileName); m->mothurOutEndLine();