changes while testing

[mothur.git] / commandoptionparser.hpp

diff --git a/commandoptionparser.hpp b/commandoptionparser.hpp
index f83f60e0064519f3e2c79ed63bb5e78fddf7065a..0c3a6f378b02a1b86c5f4cad5a52302c239b7877 100644 (file)
--- a/commandoptionparser.hpp
+++ b/commandoptionparser.hpp
@@ -2,6 +2,7 @@
 #define COMMANDOPTIONPARSER_HPP
 
 #include "mothur.h"
+#include "mothurout.h"
 
 //**********************************************************************************************************************
 
@@ -9,9 +10,11 @@ class CommandOptionParser {
 public:
        CommandOptionParser(string);
        string getCommandString();
+       string getOptionString();
        
 private:
-       string commandString;
+       string commandString, optionString;
+       MothurOut* m;
 };
 
 //**********************************************************************************************************************