X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=commandoptionparser.hpp;h=0c3a6f378b02a1b86c5f4cad5a52302c239b7877;hp=f83f60e0064519f3e2c79ed63bb5e78fddf7065a;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=c5c7502f435e1413c19e373dab1dfebcaa67588d

diff --git a/commandoptionparser.hpp b/commandoptionparser.hpp
index f83f60e..0c3a6f3 100644
--- a/commandoptionparser.hpp
+++ b/commandoptionparser.hpp
@@ -2,6 +2,7 @@
 #define COMMANDOPTIONPARSER_HPP
 
 #include "mothur.h"
+#include "mothurout.h"
 
 //**********************************************************************************************************************
 
@@ -9,9 +10,11 @@ class CommandOptionParser {
 public:
 	CommandOptionParser(string);
 	string getCommandString();
+	string getOptionString();
 	
 private:
-	string commandString;
+	string commandString, optionString;
+	MothurOut* m;
 };
 
 //**********************************************************************************************************************