added read.shared, broke up globaldata a bit

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index dbcfb54be8c09fbf6177ad2d4ed10be8773d0358..0c1b3e075ee8ade15e0ea619463df962e9eac846 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -10,6 +10,7 @@
 #include "command.hpp"
 #include "readdistcommand.h"
 #include "readtreecommand.h"
+#include "readsharedcommand.h"
 #include "readotucommand.h"
 #include "clustercommand.h"
 #include "parselistcommand.h"
@@ -55,6 +56,7 @@ Command* CommandFactory::getCommand(string commandName){
                         if(commandName == "read.dist")                         {       command = new ReadDistCommand();                        }
                else if(commandName == "read.otu")                              {       command = new ReadOtuCommand();                         }
                else if(commandName == "read.tree")                             {       command = new ReadTreeCommand();                        }
+               else if(commandName == "read.shared")                   {       command = new ReadSharedCommand();                      }
                else if(commandName == "cluster")                               {       command = new ClusterCommand();                         }
                else if(commandName == "deconvolute")                   {       command = new DeconvoluteCommand();                     }
                else if(commandName == "parsimony")                             {       command = new ParsimonyCommand();                       }