added modify names parameter to set.dir

[mothur.git] / collectcommand.h

diff --git a/collectcommand.h b/collectcommand.h
index d250126551f88a74bcdc7afebde65763e424aab7..ee1b914ee1594b4997a7706be60606e686fda305 100644 (file)
--- a/collectcommand.h
+++ b/collectcommand.h
@@ -37,8 +37,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "collect.single";                      }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getCitation() { return "http://www.mothur.org/wiki/Collect.single"; }
+       string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.single"; }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
+       string getDescription()         { return "generates collector's curves using calculators, that describe the richness, diversity, and other features of individual samples"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }