Revert to previous commit

[mothur.git] / collect.h

diff --git a/collect.h b/collect.h
new file mode 100644 (file)
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--- /dev/null
+++ b/collect.h
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+#ifndef COLLECT_H
+#define COLLECT_H
+
+#include "collectorscurvedata.h"
+#include "display.h"
+#include "ordervector.hpp"
+#include "sabundvector.hpp"
+#include "rabundvector.hpp"
+#include "sharedordervector.h"
+#include "datavector.hpp"
+#include "mothurout.h"
+
+/***********************************************************************/
+
+class Collect {
+       
+public:
+       Collect(OrderVector* order, vector<Display*> disp) :
+                                       numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  { m = MothurOut::getInstance(); };
+       Collect(SharedOrderVector* sharedorder, vector<Display*> disp) :
+                                       numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  { m = MothurOut::getInstance(); }
+
+       ~Collect(){             };
+       int getCurve(float);
+       int getSharedCurve(float);
+       
+private:
+       SharedOrderVector* sharedorder;
+       OrderVector* order;
+       vector<Display*> displays;
+       int numSeqs, numGroupComb, totalNumSeq;
+       string label, groupLabel;
+       void getGroupComb();
+       vector<string> groupComb;
+       bool validGroup(vector<string>, string);
+       MothurOut* m;
+};
+
+
+#endif
+