added sparseDistanceMatrix class. Modified cluster commands to use the new sparse...

[mothur.git] / clustersplitcommand.h

diff --git a/clustersplitcommand.h b/clustersplitcommand.h
index a82d02270ecc37f1c85e93c9fe51b70e29288081..d46bb8ed9be115e229cd1ed0ea39a993aa6f61f0 100644 (file)
--- a/clustersplitcommand.h
+++ b/clustersplitcommand.h
@@ -15,7 +15,7 @@
 #include "sabundvector.hpp"
 #include "listvector.hpp"
 #include "cluster.hpp"
-#include "sparsematrix.hpp"
+#include "sparsedistancematrix.h"
 #include "readcluster.h"
 #include "splitmatrix.h"
 #include "readphylip.h"
@@ -35,6 +35,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "cluster.split";               }
        string getCommandCategory()             { return "Clustering";                  }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Cluster.split"; }
        string getDescription()         { return "splits your sequences by distance or taxonomy then clusters into OTUs"; }