fixed bug with shhh.flow from file path name in write functions, added "smart" featur...

[mothur.git] / clustersplitcommand.cpp

diff --git a/clustersplitcommand.cpp b/clustersplitcommand.cpp
index 787d84aa3ef40042f3e2358283648ba63e8eb098..34caf654124886f9cd23638a149b2b3487ca53e2 100644 (file)
--- a/clustersplitcommand.cpp
+++ b/clustersplitcommand.cpp
@@ -201,7 +201,7 @@ ClusterSplitCommand::ClusterSplitCommand(string option)  {
                        else { distfile = fastafile;  splitmethod = "fasta";  m->setFastaFile(fastafile); }
                        
                        taxFile = validParameter.validFile(parameters, "taxonomy", true);
-                       if (taxFile == "not open") { abort = true; }    
+                       if (taxFile == "not open") { taxFile = ""; abort = true; }      
                        else if (taxFile == "not found") { taxFile = ""; }
                        else {  m->setTaxonomyFile(taxFile); }