added sets to amova and homova commands. added oligos to make.contigs. added metadat...

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index 0cffec6948a83849a078fbef99b81cb5fe7b4433..87d4f51cf78230f6ab301e1d72462a461b9f9da9 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -166,10 +166,11 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){
                
                //make classify
                Classify* myclassify;
+        string outputMethodTag = pDataArray->method + ".";
                if(pDataArray->method == "bayesian"){   myclassify = new Bayesian(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->cutoff, pDataArray->iters, pDataArray->threadID, pDataArray->flip, pDataArray->writeShortcuts);             }
                else if(pDataArray->method == "knn"){   myclassify = new Knn(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, pDataArray->numWanted, pDataArray->threadID);                           }
         else if(pDataArray->method == "zap"){  
-            outputMethodTag = search + "_" + outputMethodTag;
+            outputMethodTag = pDataArray->search + "_" + outputMethodTag;
             if (pDataArray->search == "kmer") {   myclassify = new KmerTree(pDataArray->templateFileName, pDataArray->taxonomyFileName, pDataArray->kmerSize, pDataArray->cutoff); }
             else {  myclassify = new AlignTree(pDataArray->templateFileName, pDataArray->taxonomyFileName, pDataArray->cutoff);  }
         }